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Mutant Human Ribonuclease 1 (R31L, R32L)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7RSA PDB ENTRY 7RSA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.6 293 26% PEG 4000, 0.2M ammpnium sulfate, 0.1M sodium acetate , pH 4.6, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.511 α = 90 b = 97.511 β = 90 c = 53.187 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.0000 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.8 0.092 29.3 12.5 34457
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 99.6 0.554 3.4 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 7RSA 1.6 20 32600 1737 99.89 0.19058 0.18918 0.1884 0.2172 0.2174 RANDOM 34.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.5 1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.169 r_dihedral_angle_4_deg 15.748 r_dihedral_angle_3_deg 11.655 r_dihedral_angle_1_deg 5.853 r_scangle_it 3.29 r_scbond_it 2.088 r_angle_refined_deg 1.329 r_mcangle_it 1.277 r_mcbond_it 0.832 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.169 r_dihedral_angle_4_deg 15.748 r_dihedral_angle_3_deg 11.655 r_dihedral_angle_1_deg 5.853 r_scangle_it 3.29 r_scbond_it 2.088 r_angle_refined_deg 1.329 r_mcangle_it 1.277 r_mcbond_it 0.832 r_nbtor_refined 0.3 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.188 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2014 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing