X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529825% PEG 4000, 0,2M SODIUM ACETATE, 0,1M TRIS BUFFER, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.141.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.674α = 90
b = 67.846β = 98.49
c = 73.949γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHKB-MIRROR2003-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID130.9789ESRFID13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.119.899.50.084144.52635022652
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1898.60.54122.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1UOK, 1JI2 with Caspr MODELLER NORMAL MODES2.117.832098620986113697.270.177770.174950.22969RANDOM31.584
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.180.26-0.280.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.19
r_dihedral_angle_4_deg19.865
r_dihedral_angle_3_deg16.673
r_dihedral_angle_1_deg6.715
r_scangle_it2.916
r_scbond_it1.948
r_angle_refined_deg1.446
r_mcangle_it1.343
r_mcbond_it1.1
r_angle_other_deg0.849
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.19
r_dihedral_angle_4_deg19.865
r_dihedral_angle_3_deg16.673
r_dihedral_angle_1_deg6.715
r_scangle_it2.916
r_scbond_it1.948
r_angle_refined_deg1.446
r_mcangle_it1.343
r_mcbond_it1.1
r_angle_other_deg0.849
r_nbd_refined0.207
r_nbd_other0.195
r_xyhbond_nbd_refined0.181
r_mcbond_other0.179
r_symmetry_vdw_other0.178
r_nbtor_refined0.177
r_symmetry_vdw_refined0.148
r_symmetry_hbond_refined0.096
r_nbtor_other0.087
r_chiral_restr0.084
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3269
Nucleic Acid Atoms
Solvent Atoms139
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CaspRphasing
MOLREPphasing
DMMultiphasing