2DEB

Crystal structure of rat carnitine palmitoyltransferase 2 in space group C2221


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72940.15M DL-malic acid 20% (w/v) PEG 3350 , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.4249.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.18α = 90
b = 97.29β = 90
c = 310.44γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-08-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.97899SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6230.06214.04189041188487
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6999.80.2127.2428337

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.623179022946299.750.166550.165120.19375RANDOM16.488
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.22-0.290.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.66
r_dihedral_angle_4_deg14.676
r_dihedral_angle_3_deg11.533
r_scangle_it6.808
r_dihedral_angle_1_deg5.601
r_scbond_it4.767
r_mcangle_it3.083
r_mcbond_it2.404
r_angle_refined_deg1.227
r_angle_other_deg0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.66
r_dihedral_angle_4_deg14.676
r_dihedral_angle_3_deg11.533
r_scangle_it6.808
r_dihedral_angle_1_deg5.601
r_scbond_it4.767
r_mcangle_it3.083
r_mcbond_it2.404
r_angle_refined_deg1.227
r_angle_other_deg0.79
r_mcbond_other0.714
r_symmetry_vdw_other0.246
r_nbd_refined0.216
r_nbtor_refined0.183
r_nbd_other0.181
r_symmetry_vdw_refined0.174
r_xyhbond_nbd_refined0.134
r_symmetry_hbond_refined0.131
r_nbtor_other0.084
r_chiral_restr0.072
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10068
Nucleic Acid Atoms
Solvent Atoms1364
Heterogen Atoms110

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
PHASERphasing