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Cratylia folibunda seed lectin at acidic pH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 295 16% PEG 4000, 0.125M sodium acetate, 0.1M Tris-HCL, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.213 α = 90 b = 125.44 β = 90 c = 126.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 1.072 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 63.9 24248 16570 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.79 2.96 48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 49.8 2 11147 11147 625 0.18 0.18003 0.17774 0.1843 0.21995 0.1708 RANDOM 36.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.41 0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.746 r_dihedral_angle_3_deg 19.589 r_dihedral_angle_4_deg 15.086 r_dihedral_angle_1_deg 9.053 r_mcangle_it 1.652 r_angle_refined_deg 1.519 r_scangle_it 1.38 r_mcbond_it 1.352 r_symmetry_vdw_refined 1.008 r_scbond_it 0.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.746 r_dihedral_angle_3_deg 19.589 r_dihedral_angle_4_deg 15.086 r_dihedral_angle_1_deg 9.053 r_mcangle_it 1.652 r_angle_refined_deg 1.519 r_scangle_it 1.38 r_mcbond_it 1.352 r_symmetry_vdw_refined 1.008 r_scbond_it 0.782 r_chiral_restr 0.374 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.277 r_nbd_refined 0.242 r_xyhbond_nbd_refined 0.176 r_metal_ion_refined 0.118 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7176 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing