☰ Navigation Tabs
Crystal structure of the C-Terminal fragment of rabbit skeletal alpha-tropomyosin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IC2 PDB CODE 1IC2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 293 MPD, AMMONIUM ACETATE, SODIUM CITRATE, pH 5.20, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.7 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.08 α = 101.49 b = 46.86 β = 101.66 c = 95.26 γ = 90.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 210 2005-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 1.0000 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 45.67 97.4 0.06 29 16.56 19366 19366 83.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 97.4 0.184 9 17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT PDB CODE 1IC2 2.6 45.67 19366 19366 986 0.254 0.249 0.2507 0.309 0.2469 RANDOM 90.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.2 -4.68 10.15 -35.4 -17.32 29.2
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 16.1 c_scangle_it 12.4 c_scbond_it 8.87 c_mcangle_it 7.89 c_mcbond_it 5.57 c_angle_deg 0.9 c_improper_angle_d 0.56 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 16.1 c_scangle_it 12.4 c_scbond_it 8.87 c_mcangle_it 7.89 c_mcbond_it 5.57 c_angle_deg 0.9 c_improper_angle_d 0.56 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4142 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms
Software Software Software Name Purpose CRYSTAL data collection CRYSTAL data reduction AMOLE model building CNS refinement CrystalClear data reduction CrystalClear data scaling AMoRE phasing