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The Crystal Structure of Flavin Reductase HpaC complexed with NAD+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 ammonium sulfate, iso-propanol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.62 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.449 α = 90 b = 86.449 β = 90 c = 49.029 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 23559
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 20 22306 1201 0.179 0.17956 0.17857 0.1871 0.19972 0.2132 RANDOM 20.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.353 r_scangle_it 3.554 r_scbond_it 2.333 r_angle_refined_deg 1.657 r_mcangle_it 1.651 r_angle_other_deg 1.218 r_mcbond_it 0.935 r_symmetry_vdw_other 0.259 r_nbd_other 0.25 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.353 r_scangle_it 3.554 r_scbond_it 2.333 r_angle_refined_deg 1.657 r_mcangle_it 1.651 r_angle_other_deg 1.218 r_mcbond_it 0.935 r_symmetry_vdw_other 0.259 r_nbd_other 0.25 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.153 r_xyhbond_nbd_refined 0.151 r_symmetry_hbond_refined 0.143 r_chiral_restr 0.096 r_nbtor_other 0.083 r_bond_refined_d 0.017 r_bond_other_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1259 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing