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Crystal structure of thioesterase superfamily member2 from Mus musculus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1 M Tris-HCl, 2.0 M ammonium sulphate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.522 α = 90 b = 90.195 β = 118.32 c = 61.21 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2005-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.97922, 0.97957, 0.964 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 71 0.094 8.58 2.79 9667 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.4 23.8 0.24 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.72 49.1 7819 383 95.41 0.19404 0.1906 0.2136 0.26243 0.2146 RANDOM 52.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.47 5.45 1.22 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.329 r_scangle_it 10.815 r_scbond_it 6.963 r_mcangle_it 5.192 r_angle_refined_deg 4.788 r_mcbond_it 2.952 r_angle_other_deg 1.989 r_symmetry_vdw_other 0.339 r_nbd_refined 0.334 r_nbd_other 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.329 r_scangle_it 10.815 r_scbond_it 6.963 r_mcangle_it 5.192 r_angle_refined_deg 4.788 r_mcbond_it 2.952 r_angle_other_deg 1.989 r_symmetry_vdw_other 0.339 r_nbd_refined 0.334 r_nbd_other 0.327 r_chiral_restr 0.306 r_symmetry_hbond_refined 0.242 r_xyhbond_nbd_refined 0.234 r_symmetry_vdw_refined 0.219 r_nbtor_other 0.155 r_bond_refined_d 0.078 r_gen_planes_refined 0.02 r_gen_planes_other 0.015 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1916 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing