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Crystal structure of mouse AMF / M6P complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 Cacodylate, PEG8000, NaAcetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.853 α = 90 b = 115.988 β = 101.58 c = 73.287 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.978 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 40 98.2 134480
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.65 40 127693 6754 98.11 0.16113 0.15977 0.18725 RANDOM 12.987
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.15 -0.29 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.361 r_scangle_it 2.074 r_scbond_it 1.223 r_angle_refined_deg 0.983 r_mcangle_it 0.73 r_mcbond_it 0.37 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.128 r_symmetry_hbond_refined 0.094 r_xyhbond_nbd_refined 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.361 r_scangle_it 2.074 r_scbond_it 1.223 r_angle_refined_deg 0.983 r_mcangle_it 0.73 r_mcbond_it 0.37 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.128 r_symmetry_hbond_refined 0.094 r_xyhbond_nbd_refined 0.093 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8832 Nucleic Acid Atoms Solvent Atoms 1240 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling