NMR studies on the interaction of Insulin-Growth Factor II (IGF-II) with IGF2R domain 11
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | HSQC | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 2 | TOCSY | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 3 | NOESY | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 4 | HNCA | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 5 | HNCACB | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 6 | CBCACONH | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 7 | HCCH- TCOSY | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 8 | HNHA | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 9 | HNBA | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 10 | HNCO | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 11 | HNCACO | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| 12 | HNCOCA | 5% D2O/ 95% H2O | 5.5 | 1.0 atm | 298.0 | |||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| WATER REFINED IN CNS | WATER REFINED USING RECORRD SCIPTS IN CNS. A.J.NEDERVEEN,J.F.DORELEIJERS,W.VRANKEN, Z.MILLER, C.A.SPRONK, S.B.NABUURS, P.GUNTERT, M.LIVNY, J.L.MARKLEY, M.NILGES, E.L.ULRICH, R.KAPTEIN AND A.M.BONVIN, PROTEINS. RECOORD: A RECALCULATED COORDINATES DATABASE OF 500+ PROTEINS FROM THE PDB USING RESTRAINTS FROM THE BIOMAGRESBANK. PROTEINS 59, 662-672. | CNS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | LOWEST ENERGY, LEAST VIOLATION |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Additional NMR Experimental Information | |
|---|---|
| Details | THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON UNLABELLED, 15N AND 13C, 15N-LABELED DOMAIN 11. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN | |
| 2 | structure solution | Sparky | ||
| 3 | structure solution | NMRDraw | ||
| 4 | structure solution | NMRPipe | ||
| 5 | structure solution | CNS | ||
