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High resolution crystal structure of the human kin17 C-terminal domain containing a kow motif
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.3 290 VAPOR DIFFUSION, SITTING DROP 10% ETHYLENE GLYCOL, 27% PEG 6000, 500 MM LICL, 100 MM SODIUM ACETATE PH 6.3 290 K
Crystal Properties Matthews coefficient Solvent content 2.3 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.752 α = 90 b = 46.309 β = 90 c = 60.798 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MARRESEARCH 2004-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 99 95 0.04 23.6 7 21818 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.45 32.62 2 22249 1204 98.9 0.139 0.137 0.144 0.175 0.1814 RANDOM 15.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.05 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.747 r_dihedral_angle_4_deg 20.011 r_dihedral_angle_3_deg 12.082 r_dihedral_angle_1_deg 6.704 r_scangle_it 4.529 r_scbond_it 2.909 r_angle_other_deg 1.967 r_mcangle_it 1.894 r_angle_refined_deg 1.519 r_mcbond_it 1.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.747 r_dihedral_angle_4_deg 20.011 r_dihedral_angle_3_deg 12.082 r_dihedral_angle_1_deg 6.704 r_scangle_it 4.529 r_scbond_it 2.909 r_angle_other_deg 1.967 r_mcangle_it 1.894 r_angle_refined_deg 1.519 r_mcbond_it 1.235 r_symmetry_vdw_other 0.246 r_nbd_refined 0.205 r_nbd_other 0.191 r_symmetry_hbond_refined 0.179 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.146 r_chiral_restr 0.091 r_nbtor_other 0.089 r_symmetry_vdw_refined 0.07 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 949 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling SHARP phasing