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STRUCTURE OF HELIX POMATIA AGGLUTININ WITH FORSMANN ANTIGEN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CE6 PDB ENTRY 2CE6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP HANGING DROP METHOD WITH PRECIPITATION SOLUTION CONTAINING LITHIUM SULPHATE (2 M) AND AMMONIUM SULPHATE (3.5 M) IN SODIUM CITRATE BUFFER (1.5M, PH 6.5) AND 10MM OF FORSMANN LIGAND.
Crystal Properties Matthews coefficient Solvent content 2.3 47.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.019 α = 90 b = 62.019 β = 90 c = 106.642 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2000-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 87.9 0.07 17.1 7 2945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 93.5 0.36 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CE6 2.8 20 2792 132 88.1 0.265 0.262 0.32 RANDOM 54.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.92 -1.96 -3.92 5.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.086 r_scangle_it 1.348 r_angle_refined_deg 1.242 r_scbond_it 0.75 r_angle_other_deg 0.73 r_mcangle_it 0.597 r_symmetry_vdw_refined 0.339 r_mcbond_it 0.322 r_symmetry_vdw_other 0.252 r_nbd_other 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.086 r_scangle_it 1.348 r_angle_refined_deg 1.242 r_scbond_it 0.75 r_angle_other_deg 0.73 r_mcangle_it 0.597 r_symmetry_vdw_refined 0.339 r_mcbond_it 0.322 r_symmetry_vdw_other 0.252 r_nbd_other 0.209 r_xyhbond_nbd_refined 0.198 r_nbd_refined 0.19 r_nbtor_other 0.081 r_chiral_restr 0.068 r_symmetry_hbond_refined 0.013 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 767 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing