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AGAO in complex with wc7a (Ru-wire inhibitor, 7-carbon linker, data set a)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 THE CRYSTAL WAS GROWN BY HANGING DROP OVER 150 MM CITRATE PH 7.0, 900 MM NH4SO4. THE INHIBITOR WAS ADDED BY SOAKING. A STOICHIOMETRIC EXCESS OF WIRE-INHIBITOR WAS USED, ADDED TO THE RESERVOIR. GLYCEROL WAS THEN, ADDED IN 2-3% INCREMENTS, TO THE RESERVOIR, WITH THE NEW RESERVOIR SOLUTION SUBSTITUTING THE DROP SOLUTION. THE FINAL GLYCEROL CONCENTRATION WAS 30%.
Crystal Properties Matthews coefficient Solvent content 3.25 62.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.049 α = 90 b = 62.744 β = 112.1 c = 92.064 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2004-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 30 92.2 0.04 22.75 3.955 317790 -3 22.39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.79 79.1 0.23 4.22 3.62
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.74 25.85 76355 3988 92.9 0.161 0.161 0.1638 0.176 0.1799 RANDOM 22.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 0.02 1.63 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.288 r_scangle_it 3.081 r_scbond_it 1.852 r_angle_refined_deg 1.473 r_mcangle_it 1.233 r_angle_other_deg 0.86 r_mcbond_it 0.663 r_symmetry_vdw_other 0.298 r_nbd_other 0.25 r_nbd_refined 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.288 r_scangle_it 3.081 r_scbond_it 1.852 r_angle_refined_deg 1.473 r_mcangle_it 1.233 r_angle_other_deg 0.86 r_mcbond_it 0.663 r_symmetry_vdw_other 0.298 r_nbd_other 0.25 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.161 r_symmetry_vdw_refined 0.15 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.086 r_nbtor_other 0.082 r_bond_refined_d 0.01 r_bond_other_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4868 Nucleic Acid Atoms Solvent Atoms 375 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling