X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
118-20% PEG 3500,0.2 M LI CITRATE
Crystal Properties
Matthews coefficientSolvent content
2.244.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.45α = 90
b = 69.59β = 91.55
c = 144.006γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.2BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.32095.60.0513.763.4629365-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4490.10.343.73.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRIES 2BJN, 1SZ72.3202874915131000.2230.2210.269RANDOM56.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.883.19-1.05-2.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.901
r_dihedral_angle_4_deg19.235
r_dihedral_angle_3_deg17.703
r_dihedral_angle_1_deg8.774
r_scangle_it1.672
r_angle_refined_deg1.556
r_angle_other_deg1.411
r_scbond_it1.163
r_mcangle_it0.602
r_mcbond_it0.445
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.901
r_dihedral_angle_4_deg19.235
r_dihedral_angle_3_deg17.703
r_dihedral_angle_1_deg8.774
r_scangle_it1.672
r_angle_refined_deg1.556
r_angle_other_deg1.411
r_scbond_it1.163
r_mcangle_it0.602
r_mcbond_it0.445
r_symmetry_hbond_refined0.27
r_symmetry_vdw_other0.218
r_nbd_refined0.208
r_nbd_other0.186
r_nbtor_refined0.184
r_xyhbond_nbd_refined0.17
r_symmetry_vdw_refined0.136
r_nbtor_other0.096
r_chiral_restr0.086
r_bond_refined_d0.017
r_bond_other_d0.007
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4958
Nucleic Acid Atoms
Solvent Atoms57
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing