2CEZ
Phosphorylation of the Cytoplasmic Tail of Tissue Factor and its Role in Modulating Structure and Binding Affinity
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | ROESY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 | ||
2 | NOESY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 | ||
3 | TOCSY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 | ||
4 | IP-COSY | 90% WATER 10% D2O | 0 | 6.0 | 1.0 atm | 285.0 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | OTHER | 800 |
2 | Bruker | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | INITIAL NMR STRUCTURES WERE CALCULATED BY DYANA, WHICH INCLUDES MODIFIED SEP RESIDUE, PHOSPHORYLATED SER, CRAFT AND LEGGE, 2005, J.BIOL MOL.NMR. TOP10 ANNEALLED STRUCTURES THEN FURTHER MINIMIZED VIA AMBER 8.0. | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | LOWEST POTENTIAL ENERGY ENSEMBLES |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | THE SINGLE 253 PHOSPHORYLATED TFCD PEPTIDE NMR STRUCTURES WERE CALCULATED USING 2D HOMONUCLEAR NMR SPECTROSCOPY METHODS. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 8.0 | PONDER,J.W. |
2 | structure solution | NMRPipe | ||
3 | structure solution | NMRView | ||
4 | structure solution | DYANA | ||
5 | structure solution | Amber | 8.0 | |
6 | structure solution | MOLMOL |