X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.52.0 M AMMONIUM SULFATE, 0.1 M SODIUM HEPES, PH 7.5, 2% (W/V) PEG 400
Crystal Properties
Matthews coefficientSolvent content
1.9536.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.781α = 90
b = 55.781β = 90
c = 60.261γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOSMIC MIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65099.60.073313.213027
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.661000.327.911

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2C9P1.6401234963399.40.1890.1870.225RANDOM21.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.580.58-1.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg31.797
r_dihedral_angle_2_deg26.3
r_dihedral_angle_3_deg14.207
r_scangle_it8.841
r_scbond_it8.202
r_dihedral_angle_1_deg5.705
r_mcangle_it4.468
r_mcbond_it3.816
r_angle_refined_deg1.539
r_angle_other_deg0.808
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg31.797
r_dihedral_angle_2_deg26.3
r_dihedral_angle_3_deg14.207
r_scangle_it8.841
r_scbond_it8.202
r_dihedral_angle_1_deg5.705
r_mcangle_it4.468
r_mcbond_it3.816
r_angle_refined_deg1.539
r_angle_other_deg0.808
r_symmetry_hbond_refined0.212
r_symmetry_vdw_other0.211
r_nbd_refined0.206
r_nbd_other0.191
r_xyhbond_nbd_refined0.185
r_nbtor_refined0.171
r_symmetry_vdw_refined0.161
r_chiral_restr0.091
r_nbtor_other0.085
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms738
Nucleic Acid Atoms
Solvent Atoms83
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing