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Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S2Q PDB ENTRY 1S2Q
Crystallization Crystal Properties Matthews coefficient Solvent content 2.51 50.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.097 α = 90 b = 222.534 β = 90 c = 86 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 15 98.5 0.08 10.3 3.1 134873
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1S2Q 1.7 15 131308 3411 98 0.189 0.188 0.1883 0.209 0.2091 RANDOM 16.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.47 -0.11 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.68 r_dihedral_angle_3_deg 12.543 r_dihedral_angle_4_deg 12.1 r_dihedral_angle_1_deg 5.407 r_scangle_it 2.432 r_scbond_it 1.485 r_angle_refined_deg 1.15 r_mcangle_it 0.889 r_mcbond_it 0.576 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.68 r_dihedral_angle_3_deg 12.543 r_dihedral_angle_4_deg 12.1 r_dihedral_angle_1_deg 5.407 r_scangle_it 2.432 r_scbond_it 1.485 r_angle_refined_deg 1.15 r_mcangle_it 0.889 r_mcbond_it 0.576 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.252 r_symmetry_hbond_refined 0.232 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7903 Nucleic Acid Atoms Solvent Atoms 881 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing