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Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S2Q PDB ENTRY 1S2Q
Crystallization Crystal Properties Matthews coefficient Solvent content 2.64 53.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.491 α = 90 b = 221.971 β = 90 c = 85.733 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 15 99.2 0.1 10 2.8 83429
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1S2Q 2 15 81148 2076 99.2 0.201 0.2 0.234 0.231 RANDOM 17.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.31 -0.6 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.388 r_dihedral_angle_4_deg 13.902 r_dihedral_angle_3_deg 13.253 r_dihedral_angle_1_deg 5.629 r_scangle_it 2.471 r_scbond_it 1.556 r_angle_refined_deg 1.14 r_mcangle_it 0.928 r_mcbond_it 0.619 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.388 r_dihedral_angle_4_deg 13.902 r_dihedral_angle_3_deg 13.253 r_dihedral_angle_1_deg 5.629 r_scangle_it 2.471 r_scbond_it 1.556 r_angle_refined_deg 1.14 r_mcangle_it 0.928 r_mcbond_it 0.619 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.264 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7907 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing