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Functional Role of the Aromatic Cage in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S2Q PDB ENTRY 1S2Q
Crystallization Crystal Properties Matthews coefficient Solvent content 2.62 52.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.681 α = 90 b = 222.928 β = 90 c = 86.451 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 99.6 0.11 11 3.4 74666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1S2Q 2.06 15 72581 1908 95.6 0.189 0.188 0.1906 0.226 0.2284 RANDOM 23.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.18 -1.2 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.128 r_dihedral_angle_4_deg 17.844 r_dihedral_angle_3_deg 15.132 r_dihedral_angle_1_deg 5.723 r_scangle_it 3.081 r_scbond_it 1.943 r_angle_refined_deg 1.287 r_angle_other_deg 1.287 r_mcangle_it 1.13 r_mcbond_it 0.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.128 r_dihedral_angle_4_deg 17.844 r_dihedral_angle_3_deg 15.132 r_dihedral_angle_1_deg 5.723 r_scangle_it 3.081 r_scbond_it 1.943 r_angle_refined_deg 1.287 r_angle_other_deg 1.287 r_mcangle_it 1.13 r_mcbond_it 0.763 r_symmetry_hbond_refined 0.365 r_nbtor_refined 0.303 r_nbtor_other 0.303 r_symmetry_vdw_refined 0.225 r_symmetry_vdw_other 0.225 r_nbd_refined 0.198 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_bond_other_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7911 Nucleic Acid Atoms Solvent Atoms 529 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing