☰ Navigation Tabs
Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio africanus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KEK PDB ENTRY 1KEK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 10% PEG6000, 100MM MGCL2, 100MM NA CACODYLATE, 5% DTT, pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.37 47.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.304 α = 90 b = 145.981 β = 90 c = 211.607 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 55 91.7 0.06 16.54 4.42 233941 2 17.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.89 75.9 0.29 5.02 3.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1KEK 1.78 51.15 241141 12031 94.4 0.195 0.195 0.1875 0.219 0.2115 RANDOM 25.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.97 1.99 2.98
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.5 c_scangle_it 4.01 c_scbond_it 2.93 c_mcangle_it 2.55 c_mcbond_it 1.91 c_angle_deg 1.4 c_improper_angle_d 0.8 c_bond_d 0.006 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.5 c_scangle_it 4.01 c_scbond_it 2.93 c_mcangle_it 2.55 c_mcbond_it 1.91 c_angle_deg 1.4 c_improper_angle_d 0.8 c_bond_d 0.006 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18766 Nucleic Acid Atoms Solvent Atoms 1217 Heterogen Atoms 116
Software Software Software Name Purpose CNS refinement XDS data reduction XSCALE data scaling CNS phasing