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The Crystal Structure of Aspergillus fumigatus Cyclophilin reveals 3D Domain Swapping of a Central Element
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 DROP SOLUTION: 13% AMMONIUM SULFATE, 0.1 M MES PH 6. RESERVOIR SOLUTION: 50% AMMONIUM SULFATE, 0.1 M SODIUM CITRATE PH 5.5.
Crystal Properties Matthews coefficient Solvent content 2.93 57.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.829 α = 90 b = 64.829 β = 90 c = 156.288 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 45.6 99.1 0.09 19.2 5.9 33079 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 99.9 0.49 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 55.9 31360 1675 99.1 0.191 0.189 0.1983 0.214 0.2157 RANDOM 39.81
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.13 -0.26 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.843 r_dihedral_angle_4_deg 13.02 r_dihedral_angle_3_deg 10.602 r_scangle_it 7.187 r_scbond_it 5.529 r_dihedral_angle_1_deg 4.09 r_mcangle_it 3.33 r_mcbond_it 2.94 r_angle_refined_deg 1.947 r_angle_other_deg 0.932
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.843 r_dihedral_angle_4_deg 13.02 r_dihedral_angle_3_deg 10.602 r_scangle_it 7.187 r_scbond_it 5.529 r_dihedral_angle_1_deg 4.09 r_mcangle_it 3.33 r_mcbond_it 2.94 r_angle_refined_deg 1.947 r_angle_other_deg 0.932 r_symmetry_vdw_other 0.245 r_symmetry_vdw_refined 0.199 r_nbd_refined 0.198 r_nbtor_refined 0.179 r_nbd_other 0.178 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.119 r_symmetry_hbond_refined 0.102 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2162 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing