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Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 20% PEG 10000, 0.1M BISTRIS-PROPANE PH 7.0, 0.5% PLUCORONIC F-68
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.106 α = 90 b = 93.531 β = 90 c = 106.67 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH 2005-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 46.78 99 0.08 13 3.9 36495 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 98 0.33 2.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 46.78 36494 1951 97.3 0.195 0.194 0.1924 0.232 0.2309 RANDOM 27.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.802 r_dihedral_angle_4_deg 15.18 r_dihedral_angle_3_deg 14.757 r_dihedral_angle_1_deg 5.518 r_scangle_it 3.329 r_scbond_it 2.192 r_mcangle_it 1.472 r_angle_refined_deg 1.373 r_mcbond_it 0.944 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.802 r_dihedral_angle_4_deg 15.18 r_dihedral_angle_3_deg 14.757 r_dihedral_angle_1_deg 5.518 r_scangle_it 3.329 r_scbond_it 2.192 r_mcangle_it 1.472 r_angle_refined_deg 1.373 r_mcbond_it 0.944 r_nbtor_refined 0.304 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.174 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3408 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing