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Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 20% PEG 10000, 0.1M BIS-TRIS PROPANE PH 7.0, 0.5% V/V PLURONIC ACID
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.014 α = 90 b = 93.394 β = 90 c = 106.464 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MARRESEARCH 2005-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40.19 100 0.09 13 5.4 37371 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 100 0.47 3.3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 40.19 37371 1995 100 0.187 0.185 0.1858 0.226 0.2268 RANDOM 23.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_dihedral_angle_4_deg 17.068 r_dihedral_angle_3_deg 14.822 r_dihedral_angle_1_deg 8.946 r_scangle_it 3.865 r_scbond_it 2.523 r_mcangle_it 1.578 r_angle_refined_deg 1.515 r_mcbond_it 1.066 r_symmetry_hbond_refined 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.272 r_dihedral_angle_4_deg 17.068 r_dihedral_angle_3_deg 14.822 r_dihedral_angle_1_deg 8.946 r_scangle_it 3.865 r_scbond_it 2.523 r_mcangle_it 1.578 r_angle_refined_deg 1.515 r_mcbond_it 1.066 r_symmetry_hbond_refined 0.33 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3365 Nucleic Acid Atoms Solvent Atoms 370 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE phasing