2BY9

Is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
125% PEG 8000, 0.2 M AMMONIUM SULPHATE AND 0.1 M TRIS-HCL PH 8.0
Crystal Properties
Matthews coefficientSolvent content
1.7328.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.245α = 90
b = 58.323β = 90
c = 66.735γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32098.80.0611.53.7520437.67
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.37930.2332.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.32049859213498.60.1050.1030.139RANDOM7.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.21-0.09-0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.486
r_dihedral_angle_4_deg19.277
r_dihedral_angle_3_deg11.297
r_dihedral_angle_1_deg7.282
r_scangle_it3.852
r_scbond_it3.221
r_angle_refined_deg2.439
r_mcangle_it2.32
r_mcbond_it1.733
r_angle_other_deg1.038
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.486
r_dihedral_angle_4_deg19.277
r_dihedral_angle_3_deg11.297
r_dihedral_angle_1_deg7.282
r_scangle_it3.852
r_scbond_it3.221
r_angle_refined_deg2.439
r_mcangle_it2.32
r_mcbond_it1.733
r_angle_other_deg1.038
r_nbd_refined0.436
r_symmetry_hbond_refined0.232
r_xyhbond_nbd_refined0.212
r_nbd_other0.206
r_symmetry_vdw_other0.203
r_nbtor_refined0.189
r_symmetry_vdw_refined0.167
r_chiral_restr0.126
r_nbtor_other0.091
r_bond_refined_d0.018
r_gen_planes_refined0.013
r_bond_other_d0.007
r_gen_planes_other0.007
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1629
Nucleic Acid Atoms
Solvent Atoms421
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling