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AGAO in complex with Ruthenium-C4-wire at 1.73 angstroms
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W6G PDB ENTRY 1W6G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PROTEIN (10 MG/ML) MIXED WITH EQUIVALENT VOLUME OF WELL SOLUTION (150 MM NA CITRATE (PH 6.5), 700 MM AMMONIUM SULFATE)
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.059 α = 90 b = 62.905 β = 112.11 c = 92.097 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2004-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 15 94.4 0.04 22.5 3.9 82062 -3 20.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.76 85.2 0.11 5.8 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W6G 1.73 15.02 77947 4106 94.5 0.155 0.154 0.1815 0.171 0.1953 RANDOM 15.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 0.07 3.29 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.189 r_scangle_it 5.745 r_scbond_it 3.877 r_mcangle_it 2.743 r_mcbond_it 1.778 r_angle_refined_deg 1.529 r_angle_other_deg 0.798 r_symmetry_vdw_other 0.295 r_nbd_other 0.249 r_nbd_refined 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.189 r_scangle_it 5.745 r_scbond_it 3.877 r_mcangle_it 2.743 r_mcbond_it 1.778 r_angle_refined_deg 1.529 r_angle_other_deg 0.798 r_symmetry_vdw_other 0.295 r_nbd_other 0.249 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.083 r_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4868 Nucleic Acid Atoms Solvent Atoms 508 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling