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Crystal structure of type I cytochrome c3 from Desulfovibrio africanus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.2M NAH2PO4/K2HPO4
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.9 α = 90 b = 46.3 β = 118.97 c = 54.816 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 48.22 94.8 0.06 20.2 3.9 106337
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.75 71.8 0.06 11.3 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.68 48.22 22893 1237 94.9 0.202 0.2 0.2135 0.24 0.2351 RANDOM 9.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.15 0.09 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.236 r_scangle_it 2.293 r_scbond_it 1.487 r_angle_refined_deg 1.379 r_mcangle_it 1.106 r_angle_other_deg 0.991 r_mcbond_it 0.588 r_nbd_refined 0.343 r_symmetry_hbond_refined 0.297 r_symmetry_vdw_other 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.236 r_scangle_it 2.293 r_scbond_it 1.487 r_angle_refined_deg 1.379 r_mcangle_it 1.106 r_angle_other_deg 0.991 r_mcbond_it 0.588 r_nbd_refined 0.343 r_symmetry_hbond_refined 0.297 r_symmetry_vdw_other 0.25 r_symmetry_vdw_refined 0.244 r_nbd_other 0.217 r_chiral_restr 0.151 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.085 r_bond_refined_d 0.009 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1717 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms 346
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing