X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROPSITTING DROP RESERVOIR: 0.2 M AMMONIUM CITRATE 20 % PEG3350 PROTEIN: 0.01 M HEPES PH 7.5 0.5 M NACL 5 % GLYCEROL 0.5 % TCEP
Crystal Properties
Matthews coefficientSolvent content
2.2545

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.989α = 88.72
b = 78.786β = 71.14
c = 86.019γ = 75.22
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2005-03-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.439.98910.086.41.62499892
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.5600.251.90.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1GVE2.44048161182890.40.1570.1550.205RANDOM28.88
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.490.70.220.430.91-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.902
r_dihedral_angle_4_deg18.823
r_dihedral_angle_3_deg14.866
r_dihedral_angle_1_deg5.964
r_scangle_it5.576
r_scbond_it4.089
r_mcangle_it2.071
r_mcbond_it1.505
r_angle_refined_deg1.402
r_angle_other_deg1.025
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.902
r_dihedral_angle_4_deg18.823
r_dihedral_angle_3_deg14.866
r_dihedral_angle_1_deg5.964
r_scangle_it5.576
r_scbond_it4.089
r_mcangle_it2.071
r_mcbond_it1.505
r_angle_refined_deg1.402
r_angle_other_deg1.025
r_xyhbond_nbd_refined0.208
r_nbd_refined0.205
r_symmetry_vdw_other0.202
r_nbd_other0.181
r_nbtor_refined0.179
r_symmetry_vdw_refined0.114
r_symmetry_hbond_refined0.103
r_nbtor_other0.087
r_chiral_restr0.073
r_bond_refined_d0.013
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9951
Nucleic Acid Atoms
Solvent Atoms540
Heterogen Atoms244

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing