☰ Navigation Tabs
Myosin VI nucleotide-free (MDInsert2) crystal structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OE9 PDB ENTRY 1OE9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8-10% PEG 8000, 50MM MES PH 6.7, 150MM NH4.SO4, 3% ISO-PROPANOL, 3% TERT-BUTANOL
Crystal Properties Matthews coefficient Solvent content 2.99 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.57 α = 90 b = 104.437 β = 91.26 c = 90.284 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 40 99.8 0.09 14.4 4 49721 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.9 0.42 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OE9 2.4 40 47177 2520 99.8 0.208 0.206 0.254 0.2719 RANDOM 45.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 -0.09 -1.2 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.683 r_scangle_it 2.653 r_scbond_it 1.512 r_mcangle_it 1.179 r_angle_refined_deg 1.158 r_angle_other_deg 0.776 r_mcbond_it 0.617 r_symmetry_vdw_other 0.262 r_nbd_other 0.223 r_nbd_refined 0.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.683 r_scangle_it 2.653 r_scbond_it 1.512 r_mcangle_it 1.179 r_angle_refined_deg 1.158 r_angle_other_deg 0.776 r_mcbond_it 0.617 r_symmetry_vdw_other 0.262 r_nbd_other 0.223 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.114 r_nbtor_other 0.084 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7403 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing