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Radiation damage of the Schiff base in phosphoserine aminotransferase (structure I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 30% PEG 400, 200 MM MGCL2, 5% GLYCEROL, 100 MM TRIS PH 8.2
Crystal Properties Matthews coefficient Solvent content 2.18 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.801 α = 90 b = 84.297 β = 90 c = 67.264 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 12 93.7 0.04 96 6.3 187887 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 94.7 0.26 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER FREE R-VALUE 1.3 12 187766 9397 93.7 0.1166 0.1154 0.1281 0.1559 0.1369 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 31 4936 6524
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.094 s_non_zero_chiral_vol 0.081 s_zero_chiral_vol 0.071 s_similar_adp_cmpnt 0.055 s_angle_d 0.031 s_from_restr_planes 0.0295 s_similar_dist 0.025 s_anti_bump_dis_restr 0.024 s_bond_d 0.013 s_rigid_bond_adp_cmpnt 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5590 Nucleic Acid Atoms Solvent Atoms 876 Heterogen Atoms 63
Software Software Software Name Purpose SHELXL-97 refinement HKL data reduction HKL data scaling