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Human deltaF508 NBD1 with three solubilizing mutations
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XMJ PDB ENTRY 1XMJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 280 39% PEG4000, 0.1M LiCl, 50mM Tris, pH 9.0, 3mM ATP, 5mM MgCl2, 2mM TCEP, VAPOR DIFFUSION, HANGING DROP, temperature 280K
Crystal Properties Matthews coefficient Solvent content 1.96 36.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.937 α = 90 b = 66.225 β = 90 c = 122.531 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2005-02-11 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 28.82 31918 -4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1XMJ 2.05 24.93 31918 31918 1608 97 0.226 0.226 0.2225 0.2913 0.3075 random 27.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.318 -0.531 -0.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.54 r_scangle_it 3.03 r_scbond_it 1.929 r_mcangle_it 1.688 r_angle_refined_deg 1.384 r_mcbond_it 0.951 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3825 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 64
Software Software Software Name Purpose MAR345 data collection SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling