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Crystal structure of CLA-producing fatty acid isomerase from P. acnes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 0.6% 2-methyl-2,4-pentanediol, 0.1M HEPES, 2M ammonium suplhate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.63 53.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.654 α = 90 b = 60.82 β = 117.67 c = 71.779 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 85.3 0.09 12.8 3.2 20803 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 14.7 0.244 3 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 40 19740 1063 91.09 0.1613 0.15767 0.1648 0.22777 0.2312 RANDOM 20.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -0.01 0.04 1.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.003 r_dihedral_angle_4_deg 19.089 r_dihedral_angle_3_deg 13.168 r_dihedral_angle_1_deg 6.414 r_scangle_it 2.096 r_scbond_it 1.459 r_angle_refined_deg 1.305 r_angle_other_deg 0.894 r_mcangle_it 0.778 r_mcbond_it 0.693
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.003 r_dihedral_angle_4_deg 19.089 r_dihedral_angle_3_deg 13.168 r_dihedral_angle_1_deg 6.414 r_scangle_it 2.096 r_scbond_it 1.459 r_angle_refined_deg 1.305 r_angle_other_deg 0.894 r_mcangle_it 0.778 r_mcbond_it 0.693 r_symmetry_vdw_other 0.218 r_nbd_other 0.194 r_nbd_refined 0.193 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.161 r_symmetry_hbond_refined 0.12 r_mcbond_other 0.099 r_nbtor_other 0.083 r_chiral_restr 0.072 r_symmetry_vdw_refined 0.062 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3459 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing