2BA9

Crystal structure of CLA-producing fatty acid isomerase from P. acnes


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52835% PEG 400, 0.02M HEPES, 0.1M magnesium sulphate, 2.2M ammonium sulphate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties
Matthews coefficientSolvent content
2.6954.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.707α = 90
b = 60.759β = 115.85
c = 72.158γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9550100375271
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.0298.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9546.3734437186595.180.214950.212560.25908RANDOM21.631
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.620.65-0.051.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.442
r_dihedral_angle_4_deg18.318
r_dihedral_angle_3_deg13.824
r_dihedral_angle_1_deg6.396
r_scangle_it1.906
r_scbond_it1.238
r_angle_refined_deg1.228
r_angle_other_deg0.863
r_mcangle_it0.687
r_mcbond_it0.389
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.442
r_dihedral_angle_4_deg18.318
r_dihedral_angle_3_deg13.824
r_dihedral_angle_1_deg6.396
r_scangle_it1.906
r_scbond_it1.238
r_angle_refined_deg1.228
r_angle_other_deg0.863
r_mcangle_it0.687
r_mcbond_it0.389
r_symmetry_vdw_other0.265
r_symmetry_hbond_refined0.223
r_nbd_refined0.21
r_nbd_other0.203
r_nbtor_refined0.182
r_metal_ion_refined0.176
r_xyhbond_nbd_refined0.164
r_symmetry_vdw_refined0.138
r_mcbond_other0.089
r_nbtor_other0.08
r_chiral_restr0.07
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3447
Nucleic Acid Atoms
Solvent Atoms432
Heterogen Atoms92

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing