☰ Navigation Tabs
Crystal structure of the binding protein OpuAC in complex with proline betaine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B4L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.25 274 Tris, ammonium acetate, PEG 4000, pH 8.25, VAPOR DIFFUSION, HANGING DROP, temperature 274K
Crystal Properties Matthews coefficient Solvent content 2.17 43.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.562 α = 90 b = 28.318 β = 93.87 c = 102.826 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 15 83 13067 10846 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.84 70.7 0.312 2.4 369
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B4L 2.8 15 13067 10300 546 82.4 0.23322 0.23056 0.2354 0.28302 0.2203 RANDOM 15.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 5.49 -1.16 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.522 r_dihedral_angle_3_deg 19.143 r_dihedral_angle_4_deg 9.138 r_dihedral_angle_1_deg 5.759 r_angle_refined_deg 1.133 r_scangle_it 0.919 r_scbond_it 0.549 r_mcangle_it 0.378 r_symmetry_vdw_refined 0.24 r_mcbond_it 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.522 r_dihedral_angle_3_deg 19.143 r_dihedral_angle_4_deg 9.138 r_dihedral_angle_1_deg 5.759 r_angle_refined_deg 1.133 r_scangle_it 0.919 r_scbond_it 0.549 r_mcangle_it 0.378 r_symmetry_vdw_refined 0.24 r_mcbond_it 0.226 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4122 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing