2AWG

Structure of the PPIase domain of the Human FK506-binding protein 8


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.52981.8M ammonium sulfate, 0.2M sodium acetate, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.50
Crystal Properties
Matthews coefficientSolvent content
2.0840.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.911α = 90
b = 53.795β = 92.43
c = 30.64γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2005-08-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.630.89940.04937.26.212477-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.6666.40.1836.753.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Q1C1.630.89124771187160593.970.168740.167050.20224RANDOM24.74
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.23-0.35-0.420.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.764
r_dihedral_angle_4_deg17.369
r_dihedral_angle_3_deg12.31
r_dihedral_angle_1_deg6.306
r_scangle_it4.764
r_scbond_it3.15
r_mcangle_it2.239
r_mcbond_it1.445
r_angle_refined_deg1.355
r_nbtor_refined0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.764
r_dihedral_angle_4_deg17.369
r_dihedral_angle_3_deg12.31
r_dihedral_angle_1_deg6.306
r_scangle_it4.764
r_scbond_it3.15
r_mcangle_it2.239
r_mcbond_it1.445
r_angle_refined_deg1.355
r_nbtor_refined0.31
r_symmetry_vdw_refined0.225
r_nbd_refined0.202
r_xyhbond_nbd_refined0.106
r_symmetry_hbond_refined0.103
r_chiral_restr0.093
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms884
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing