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Lysozyme structure derived from thin-film-based crystals
Crystallization Crystal Properties Matthews coefficient Solvent content 2.05 39.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.21 α = 90 b = 79.21 β = 90 c = 37.42 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2004-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.9755 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 27.2 13598
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.7 27 2.2 13598 12866 6799 0.22 0.208 0.208 0.2014 0.283 0.1912 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.475 r_dihedral_angle_4_deg 26.76 r_dihedral_angle_3_deg 12.761 r_dihedral_angle_1_deg 7.027 r_angle_refined_deg 2.047 r_angle_other_deg 1.011 r_symmetry_vdw_refined 0.336 r_symmetry_hbond_refined 0.316 r_symmetry_vdw_other 0.239 r_xyhbond_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.475 r_dihedral_angle_4_deg 26.76 r_dihedral_angle_3_deg 12.761 r_dihedral_angle_1_deg 7.027 r_angle_refined_deg 2.047 r_angle_other_deg 1.011 r_symmetry_vdw_refined 0.336 r_symmetry_hbond_refined 0.316 r_symmetry_vdw_other 0.239 r_xyhbond_nbd_refined 0.233 r_nbd_refined 0.224 r_nbtor_refined 0.205 r_chiral_restr 0.16 r_nbd_other 0.122 r_nbtor_other 0.079 r_bond_refined_d 0.02 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling CNS refinement Quanta model building XTALVIEW refinement REFMAC refinement CCP4 data scaling CNS phasing