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Structure of a conserved domain from locus EF2947 from Enterococcus faecalis V583
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291 PEG 1K, imidazole, calcium acetate, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.1 40.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.779 α = 90 b = 63.492 β = 90 c = 43.344 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315 2005-08-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97956, 0.97973 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 43 97.58 7557 7557
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 99.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 35.8 7557 7557 374 97.58 0.20261 0.20261 0.19834 0.1973 0.28877 0.2863 RANDOM 46.885
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 -0.04 1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.871 r_dihedral_angle_3_deg 15.747 r_dihedral_angle_4_deg 15.366 r_dihedral_angle_1_deg 6.32 r_scangle_it 4.605 r_scbond_it 3.181 r_mcangle_it 1.884 r_angle_refined_deg 1.426 r_mcbond_it 1.393 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.871 r_dihedral_angle_3_deg 15.747 r_dihedral_angle_4_deg 15.366 r_dihedral_angle_1_deg 6.32 r_scangle_it 4.605 r_scbond_it 3.181 r_mcangle_it 1.884 r_angle_refined_deg 1.426 r_mcbond_it 1.393 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.28 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.197 r_chiral_restr 0.108 r_bond_refined_d 0.018 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1040 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELX phasing MLPHARE phasing DM phasing CCP4 phasing Coot model building O model building