2AS9

Functional and structural characterization of Spl proteases from staphylococcus aureus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.2280PEG 8000, Zn-acetate, Na-cacodylate, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 280K
Crystal Properties
Matthews coefficientSolvent content
2.448

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.12α = 90
b = 81.4β = 90
c = 107.39γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90IMAGE PLATEMACSCIENCE DIP100Smirror, monochromator2005-05-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW61.05MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.764.5599.9519985199822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.843.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.72025199849311264799.930.2150.2130.2110.243RANDOM19.653
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.03-1.090.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.902
r_dihedral_angle_3_deg12.337
r_dihedral_angle_4_deg7.905
r_dihedral_angle_1_deg6.003
r_scangle_it2.649
r_scbond_it1.749
r_angle_refined_deg1.21
r_mcangle_it1.122
r_mcbond_it0.663
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.902
r_dihedral_angle_3_deg12.337
r_dihedral_angle_4_deg7.905
r_dihedral_angle_1_deg6.003
r_scangle_it2.649
r_scbond_it1.749
r_angle_refined_deg1.21
r_mcangle_it1.122
r_mcbond_it0.663
r_nbtor_refined0.304
r_nbd_refined0.209
r_symmetry_vdw_refined0.179
r_symmetry_hbond_refined0.159
r_xyhbond_nbd_refined0.146
r_chiral_restr0.087
r_metal_ion_refined0.075
r_symmetry_metal_ion_refined0.015
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3041
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
SHELXSphasing