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Crystal Structure of a Protein of Unknown Function AQ1966 from Aquifex aeolicus VF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 298 ammonium sulfate, citric acid, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.611 α = 90 b = 121.611 β = 90 c = 102.071 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 2004-06-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940, 0.97954 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 50 99.9 0.089 7.4 28687 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.55 99.4 0.692 2.25 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.46 20 31023 27283 1657 99.69 0.22943 0.2262 0.234 0.29006 0.296 RANDOM 46.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.03 -0.07 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_3_deg 22.317 r_dihedral_angle_4_deg 19.618 r_dihedral_angle_1_deg 8.194 r_scangle_it 3.709 r_scbond_it 2.387 r_angle_refined_deg 1.865 r_mcangle_it 1.469 r_mcbond_it 0.88 r_symmetry_hbond_refined 0.621
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.104 r_dihedral_angle_3_deg 22.317 r_dihedral_angle_4_deg 19.618 r_dihedral_angle_1_deg 8.194 r_scangle_it 3.709 r_scbond_it 2.387 r_angle_refined_deg 1.865 r_mcangle_it 1.469 r_mcbond_it 0.88 r_symmetry_hbond_refined 0.621 r_nbtor_refined 0.315 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.212 r_chiral_restr 0.13 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4913 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing SOLVE phasing