2AQ4

Ternary complex of the catalytic core of REV1 with DNA and dCTP.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
4.2470.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 177.32α = 90
b = 200.906β = 90
c = 55.586γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
21x-ray MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X6ANSLSX6A
2SYNCHROTRONNSLS BEAMLINE X4A0.97923, 0.97906, 0.96859NSLSX4A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.35099.30.11213.35.34276842757

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.325040635211898.50.198920.196860.23781RANDOM33.393
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.68-0.46-3.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.488
r_scangle_it6.302
r_scbond_it4.353
r_angle_refined_deg3.047
r_mcangle_it2.645
r_mcbond_it1.485
r_symmetry_vdw_refined0.376
r_nbd_refined0.259
r_chiral_restr0.2
r_xyhbond_nbd_refined0.171
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.488
r_scangle_it6.302
r_scbond_it4.353
r_angle_refined_deg3.047
r_mcangle_it2.645
r_mcbond_it1.485
r_symmetry_vdw_refined0.376
r_nbd_refined0.259
r_chiral_restr0.2
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.08
r_bond_refined_d0.035
r_gen_planes_refined0.01
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3378
Nucleic Acid Atoms569
Solvent Atoms140
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling