2AMI
Solution Structure Of The Calcium-loaded N-Terminal Sensor Domain Of Centrin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1-2mM Centrin unlabeled; 25mM Tris-d11, 5-10mM CaCl2, pH 7.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 5-10mM CaCl2 | 7 | ambient | 298 | |
2 | 3D 15N-NOESY-HSQC | 1-2mM Centrin U-15N; 25mM Tris-d11, 5-10mM CaCl2, pH 7.0; 90% H2O, 10% D2O | 90% H2O/10% D2O | 5-10mM CaCl2 | 7 | ambient | 298 | |
3 | 3D 13C-NOESY-HSQC | 1-2mM Centrin U-13C; 25mM Tris-d11, 5-10mM CaCl2, pH 7.0; 100% D2O | 100% D2O | 5-10mM CaCl2 | 7 | ambient | 298 | |
4 | 4D 13C-HMQC-NOESY-HMQC | 1-2mM Centrin U-13C; 25mM Tris-d11, 5-10mM CaCl2, pH 7.0; 100% D2O | 100% D2O | 5-10mM CaCl2 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry simulated annealing | A total of 1248 experimentally derived NMR restraints (1108 NOE-based distance restraints, 24 hydrogen bond distance restraints, 116 backbone torsion angle restraints) were used in the structure calculations. | FELIX |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations,lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | FELIX | 2000 | Accelrys |
2 | processing | SANE | 1 | Duggan, B.M. |
3 | structure solution | DYANA | 1.5 | Guntert P. |
4 | refinement | AMBER | 7.0 | Pearlman, D.A. |
5 | collection | XWINNMR | 2.6 | Bruker |