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Cyrstal structure of cocaine catalytic antibody 7A1 Fab'
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AJS PDB ENTRY 2AJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 PEG 4000, ammonium sulfate, sodium acetate, flavin adenine dinucleotide, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.4 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.797 α = 90 b = 117.256 β = 90 c = 85.984 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.0332 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.5 0.038 72464 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 97.4 0.613
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AJS 1.5 39.84 68745 3692 100 0.18379 0.18144 0.1841 0.22823 0.2266 RANDOM 28.575
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 -0.05 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.352 r_dihedral_angle_4_deg 16.558 r_dihedral_angle_3_deg 13.341 r_dihedral_angle_1_deg 6.756 r_sphericity_free 5.764 r_scangle_it 4.214 r_sphericity_bonded 3.993 r_scbond_it 3.117 r_mcangle_it 2.525 r_rigid_bond_restr 1.891
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.352 r_dihedral_angle_4_deg 16.558 r_dihedral_angle_3_deg 13.341 r_dihedral_angle_1_deg 6.756 r_sphericity_free 5.764 r_scangle_it 4.214 r_sphericity_bonded 3.993 r_scbond_it 3.117 r_mcangle_it 2.525 r_rigid_bond_restr 1.891 r_mcbond_it 1.642 r_angle_refined_deg 1.57 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.199 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.148 r_chiral_restr 0.122 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3403 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing