2AIH
1H-NMR solution structure of a trypsin/chymotrypsin Bowman-Birk inhibitor from Lens culinaris.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 288 | |
2 | 2D TOCSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 293 | |
3 | 2D TOCSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 298 | |
4 | 2D TOCSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 303 | |
5 | 2D TOCSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 5 mM | 4.2 | ambient | 298 | |
6 | 2D TOCSY | 1 mM LCTI, unbuffered solution | 100% D2O | 3 mM | 3.0 | ambient | 298 | |
7 | 2D NOESY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 298 | |
8 | DQF-COSY | 1 mM LCTI, unbuffered solution, 90% H2O, 10% D2O | 90% H2O/10% D2O | 3 mM | 3.0 | ambient | 298 | |
9 | DQF-COSY | 1 mM LCTI, unbuffered solution | 100% D2O | 3 mM | 3.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing molecular dynamics matrix relaxation energy minimization | the structures are based on a total of 2745 restraints, of which 632 are NOE-derived distance constraints for the initial stage of Simulated Annealing, 2068 are NOESY-derived cross-peak volumes for final refinement, 29 vicinal coupling constants restraints, 16 distance restraints for hydrogen bond definitions; The chloride atoms at the end of each model were added during the refinement stage of restrained energy minimization to reduce overall charge. Positions are not experimentally determined but are a result of calculations | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 52 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
---|---|
Details | NOESY experiments were performed at 298 K at three different mixing times (0.080s, 0.120s, 0.350s) for distance restraints calculations and cross-peak volume measurements |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | |
2 | processing | XwinNMR | 2.6 | |
3 | data analysis | Sparky | 3.106 | Goddard, T.D. and Kneller, D.G. |
4 | refinement | X-PLOR | 3.1851 | Brunger, A.T. |
5 | iterative matrix relaxation | X-PLOR | 3.1851 | Brunger, A.T. |