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Solution structure of Polypyrimidine Tract Binding protein RBD34 complexed with CUCUCU RNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1.5mM PTB RBD34 15N; 3mM CUCUCU-RNA; 20mM phosphate buffer; 10mM NaCl 100% D2O 30mM 6.00 ambient 313 2 2D TOCSY 1.5mM PTB RBD34 15N; 3mM CUCUCU-RNA; 20mM phosphate buffer; 10mM NaCl 100% D2O 30mM 6.00 ambient 313 3 3D_13C-separated_NOESY 1.5mM PTB RBD34 15N, 13C; 3mM CUCUCU-RNA; 20mM phosphate buffer; 10mM NaCl 90% H2O/10% D2O 30mM 6.00 ambient 313 4 3D_15N-separated_NOESY 1.5mM PTB RBD34 15N; 3mM CUCUCU-RNA; 20mM phosphate buffer; 10mM NaCl 90% H2O/10% D2O 30mM 6.00 ambient 313
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 500 2 Bruker DRX 600 3 Bruker AVANCE 900
NMR Refinement Method Details Software distance geometry simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker 2 data analysis Sparky 3.0 Goddard 3 structure solution DYANA 3.02 Guentert 4 refinement Amber 7 Case