NMR solution structure of the E.coli F-ATPase delta subunit N-terminal domain in complex with alpha subunit N-terminal 22 residues
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
| 2 | 13C/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
| 3 | 12C/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
| 4 | 14N/12C filtered 2-D NOESY | 0.6 mM delta subunit N-terminal domain U-13C,15N; 0.9 mM alpha subunit N-terminal peptide; 10 mM Na,K phosphate, pH 7.2, 3mM NaN3, 0.1 mM EDTA; 93% H20, 7% D20 | 93% H20, 7% D20 | 50 mM | 7.2 | ambient | 295 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 500 |
| 2 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry; simulated annealing; molecular dynamics | rms difference of non-H atoms 1.114, for the backbone atoms 0.6174 | X-PLOR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | averaged minimized structure |
| Conformers Calculated Total Number | 10 |
| Conformers Submitted Total Number | 1 |
| Representative Model | (minimized average structure) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | X-PLOR | 3.8 | AT Brunger |
| 2 | data analysis | Felix | 98 | Accelrys |
| 3 | refinement | X-PLOR | 3.8 | AT Brunger |














