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X-Ray Structure of Protein from Mus Musculus MM.29898
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 277 10 MG/ML PROTEIN, 18% MEPEG 2K,
0.100 M SODIUM CITRATE, 0.100 M SODIUM ACETATE, vapor diffusion, hanging drop, temperature 277K, pH 5.00
Crystal Properties Matthews coefficient Solvent content 2.5 49.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.541 α = 90 b = 73.541 β = 90 c = 236.078 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD HORIZONTAL SAGITALLY FOCUSING 2ND BENT MONOCHROMATOR CRYSTAL, VERTICAL BENT FOCUSING MIRROR 2005-06-13 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.96802, 0.96411 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 98.5 0.061 16.785 13.2 17029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.4 100 0.446 5.272 13.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.32 43.27 16081 858 98.5 0.212 0.21 0.214 0.239 0.2466 RANDOM 68.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.07 0.14 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.548 r_dihedral_angle_4_deg 22.246 r_dihedral_angle_3_deg 17.919 r_dihedral_angle_1_deg 6.471 r_scangle_it 4.306 r_scbond_it 2.865 r_angle_refined_deg 1.834 r_mcangle_it 1.581 r_mcbond_it 0.974 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.548 r_dihedral_angle_4_deg 22.246 r_dihedral_angle_3_deg 17.919 r_dihedral_angle_1_deg 6.471 r_scangle_it 4.306 r_scbond_it 2.865 r_angle_refined_deg 1.834 r_mcangle_it 1.581 r_mcbond_it 0.974 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.176 r_symmetry_hbond_refined 0.154 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1813 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SOLOMON phasing ARP/wARP model building