X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729816% PEG8000, 0.3M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.550.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.601α = 90
b = 58.395β = 110.66
c = 98.098γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATERIGAKU RAXIS IVMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU3001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.730.599.90.17410.64.9263242632452.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.899.9610024.82612

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.730.52496724967133499.760.1880.1880.1850.247RANDOM40.378
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.44-0.61-0.69-1.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.581
r_dihedral_angle_4_deg18.497
r_dihedral_angle_3_deg17.979
r_dihedral_angle_1_deg6.067
r_scangle_it1.511
r_angle_refined_deg1.184
r_scbond_it0.895
r_mcangle_it0.805
r_mcbond_it0.448
r_nbtor_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.581
r_dihedral_angle_4_deg18.497
r_dihedral_angle_3_deg17.979
r_dihedral_angle_1_deg6.067
r_scangle_it1.511
r_angle_refined_deg1.184
r_scbond_it0.895
r_mcangle_it0.805
r_mcbond_it0.448
r_nbtor_refined0.305
r_nbd_refined0.201
r_symmetry_vdw_refined0.179
r_symmetry_hbond_refined0.156
r_xyhbond_nbd_refined0.139
r_chiral_restr0.079
r_bond_refined_d0.008
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6776
Nucleic Acid Atoms
Solvent Atoms124
Heterogen Atoms35

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
AMoREphasing