2A1I

Crystal Structure of the Central Domain of Human ERCC1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5295MES, PEG 5000 MME, GLYCEROL, pH 6.5, VAPOR DIFFUSION, SITTING DROP,temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.347

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.07α = 90
b = 50.291β = 90
c = 72.216γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray116CCDADSC QUANTUM 3152004-11-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID1.00636APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95099.7119681193233
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9799.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.9303113431130958699.570.217630.206240.204150.24762RANDOM33.183
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.42-1.94-1.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.298
r_scangle_it3.969
r_scbond_it2.583
r_angle_refined_deg1.701
r_mcangle_it1.655
r_mcbond_it0.887
r_nbd_refined0.258
r_xyhbond_nbd_refined0.237
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.189
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.298
r_scangle_it3.969
r_scbond_it2.583
r_angle_refined_deg1.701
r_mcangle_it1.655
r_mcbond_it0.887
r_nbd_refined0.258
r_xyhbond_nbd_refined0.237
r_symmetry_vdw_refined0.213
r_symmetry_hbond_refined0.189
r_chiral_restr0.163
r_bond_refined_d0.018
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1039
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing