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Inhibitor of GTP-Bound KRASG12C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 293 30% PEG 3000
0.1M pH=9.5 CHES/NaOH
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.365 α = 90 b = 105.365 β = 90 c = 33.613 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 52.68 74.1 0.09 10.4 5 7090
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.899 1.217
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.79 52.68 6563 340 52.95 0.2402 0.23385 0.2406 0.36779 0.3794 RANDOM 36.004
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.02 -0.03 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.18 r_dihedral_angle_3_deg 19.765 r_dihedral_angle_1_deg 16.975 r_dihedral_angle_4_deg 16.596 r_long_range_B_refined 6.452 r_long_range_B_other 6.444 r_scbond_it 3.195 r_scbond_other 3.18 r_mcbond_it 2.896 r_mcbond_other 2.894
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.18 r_dihedral_angle_3_deg 19.765 r_dihedral_angle_1_deg 16.975 r_dihedral_angle_4_deg 16.596 r_long_range_B_refined 6.452 r_long_range_B_other 6.444 r_scbond_it 3.195 r_scbond_other 3.18 r_mcbond_it 2.896 r_mcbond_other 2.894 r_angle_refined_deg 1.579 r_angle_other_deg 0.552 r_chiral_restr 0.072 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1174 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing