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Inhibitor of GTP-Bound KRASG12C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 30% PEG 3350
0.1M pH=5.5 Na acetate/acetic acid
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.87 α = 90 b = 41.027 β = 100.21 c = 72.003 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2020-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9795 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 70.86 100 0.107 10.5 3.4 42662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 100 1.447 1.2 3.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.56 70.86 34738 1807 90.68 0.18891 0.18719 0.1962 0.22016 0.2302 RANDOM 20.016
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.21 -1 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.917 r_dihedral_angle_4_deg 18.251 r_dihedral_angle_1_deg 15.694 r_dihedral_angle_3_deg 13.338 r_long_range_B_refined 4.519 r_long_range_B_other 4.438 r_scbond_it 1.695 r_scbond_other 1.693 r_angle_refined_deg 1.485 r_mcbond_it 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.917 r_dihedral_angle_4_deg 18.251 r_dihedral_angle_1_deg 15.694 r_dihedral_angle_3_deg 13.338 r_long_range_B_refined 4.519 r_long_range_B_other 4.438 r_scbond_it 1.695 r_scbond_other 1.693 r_angle_refined_deg 1.485 r_mcbond_it 0.85 r_mcbond_other 0.85 r_angle_other_deg 0.5 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2612 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing