29JD | pdb_000029jd

NMR Structure of the Calcium bound form of OutG, major pilin from Dickeya dadantii T2SS

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
2	3D HNCO	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
3	3D HN(CA)CO	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
4	3D HNCA	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
5	3D HN(CO)CA	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
6	3D HNCACB	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
7	3D HN(COCA)CB	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
8	3D C(CO)NH	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
9	3D H(CCO)NH	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
10	2D 1H-13C HSQC	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
11	3D HCCH-TOCSY	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
12	3D 1H-15N NOESY	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE III HD 600
13	3D 1H-13C NOESY	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE NEO 800
14	2D HBCBCGCDHD	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE NEO 800
15	2D HBCBCGCDCEHE	0.43 mM [U-13C; U-15N] OutG, 100 mM NaCl, 5 mM CaCl2, 50 mM HEPES, 95 % H2O, 5 % [U-2H] D2O	95% H2O/5% D2O	0.05 M	6	1 atm	298	Bruker AVANCE NEO 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	600
2	Bruker	AVANCE NEO	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CcpNmr Analysis	2.5.1	CCPN
2	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	structure calculation	ARIA		Linge, O'Donoghue and Nilges
4	peak picking	CcpNmr Analysis		CCPN
5	data analysis	TALOS		Cornilescu, Delaglio and Bax
6	processing	TopSpin		Bruker Biospin