29DA | pdb_000029da

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3ZV8

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	0.1 M Tris-HCl pH 8, 0.2 M Ammonium acetate, 25% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.7	66.77

Symmetry
Space Group	P 31 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2026-01-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.0332	PETRA III, DESY	P11

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.08	48.68	99.87	0.999	15.07	9.8		19582

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.08	2.154			0.674

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.08	48.679	19582	980	99.883	0.202	0.2002	0.2053	0.2338	0.2405	60.368

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.809	0.904		1.809		-5.868

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.699
r_dihedral_angle_6_deg	13.868
r_lrange_it	12.132
r_lrange_other	12.128
r_scangle_it	10.323
r_scangle_other	10.319
r_dihedral_angle_1_deg	7.631
r_dihedral_angle_2_deg	7.231
r_scbond_it	7.15
r_scbond_other	7.146

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.699
r_dihedral_angle_6_deg	13.868
r_lrange_it	12.132
r_lrange_other	12.128
r_scangle_it	10.323
r_scangle_other	10.319
r_dihedral_angle_1_deg	7.631
r_dihedral_angle_2_deg	7.231
r_scbond_it	7.15
r_scbond_other	7.146
r_mcangle_it	6.796
r_mcangle_other	6.786
r_dihedral_angle_other_2_deg	5.37
r_mcbond_it	5.065
r_mcbond_other	5.064
r_angle_refined_deg	1.775
r_angle_other_deg	0.677
r_dihedral_angle_other_3_deg	0.43
r_symmetry_nbd_refined	0.233
r_symmetry_nbd_other	0.207
r_nbd_refined	0.202
r_nbd_other	0.195
r_nbtor_refined	0.183
r_symmetry_xyhbond_nbd_refined	0.178
r_xyhbond_nbd_refined	0.123
r_chiral_restr	0.097
r_symmetry_nbtor_other	0.093
r_bond_refined_d	0.007
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1469
Nucleic Acid Atoms
Solvent Atoms	58
Heterogen Atoms	39

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.